Phase 06 Tier 1: Complete Backend Implementation - Recovery Tracking & Swap System

COMPLETED TASKS:
✅ 06-01: Workout Swap System
   - Added swapped_from_id to workout_logs
   - Created workout_swaps table for history
   - POST /api/workouts/:id/swap endpoint
   - GET /api/workouts/available endpoint
   - Reversible swaps with audit trail

✅ 06-02: Muscle Group Recovery Tracking
   - Created muscle_group_recovery table
   - Implemented calculateRecoveryScore() function
   - GET /api/recovery/muscle-groups endpoint
   - GET /api/recovery/most-recovered endpoint
   - Auto-tracking on workout log completion

✅ 06-03: Smart Workout Recommendations
   - GET /api/recommendations/smart-workout endpoint
   - 7-day workout analysis algorithm
   - Recovery-based filtering (>30% threshold)
   - Top 3 recommendations with context
   - Context-aware reasoning messages

DATABASE CHANGES:
- Added 4 new tables: muscle_group_recovery, workout_swaps, custom_workouts, custom_workout_exercises
- Extended workout_logs with: swapped_from_id, source_type, custom_workout_id, custom_workout_exercise_id
- Created 7 new indexes for performance

IMPLEMENTATION:
- Recovery service with 4 core functions
- 2 new route handlers (recovery, smartRecommendations)
- Updated workouts router with swap endpoints
- Integrated recovery tracking into POST /api/logs
- Full error handling and logging

TESTING:
- Test file created: /backend/test/phase-06-tests.js
- Ready for E2E and staging validation

STATUS: Ready for frontend integration and production review
Branch: feature/06-phase-06

.claude/commands/monitoring/agents.md

@@ -0,0 +1,44 @@
+# List Active Patterns
+
+## 🎯 Key Principle
+**This tool coordinates Claude Code's actions. It does NOT write code or create content.**
+
+## MCP Tool Usage in Claude Code
+
+**Tool:** `mcp__claude-flow__agent_list`
+
+## Parameters
+```json
+{
+  "swarmId": "current"
+}
+```
+
+## Description
+View all active cognitive patterns and their current focus areas
+
+## Details
+Filters:
+- **all**: Show all defined patterns
+- **active**: Currently engaged patterns
+- **idle**: Available but unused patterns
+- **busy**: Patterns actively coordinating tasks
+
+## Example Usage
+
+**In Claude Code:**
+1. List all agents: Use tool `mcp__claude-flow__agent_list`
+2. Get specific agent metrics: Use tool `mcp__claude-flow__agent_metrics` with parameters `{"agentId": "coder-123"}`
+3. Monitor agent performance: Use tool `mcp__claude-flow__swarm_monitor` with parameters `{"interval": 2000}`
+
+## Important Reminders
+- ✅ This tool provides coordination and structure
+- ✅ Claude Code performs all actual implementation
+- ❌ The tool does NOT write code
+- ❌ The tool does NOT access files directly
+- ❌ The tool does NOT execute commands
+
+## See Also
+- Main documentation: /CLAUDE.md
+- Other commands in this category
+- Workflow examples in /workflows/