Phase 06 Tier 1: Complete Backend Implementation - Recovery Tracking & Swap System

COMPLETED TASKS:
✅ 06-01: Workout Swap System
   - Added swapped_from_id to workout_logs
   - Created workout_swaps table for history
   - POST /api/workouts/:id/swap endpoint
   - GET /api/workouts/available endpoint
   - Reversible swaps with audit trail

✅ 06-02: Muscle Group Recovery Tracking
   - Created muscle_group_recovery table
   - Implemented calculateRecoveryScore() function
   - GET /api/recovery/muscle-groups endpoint
   - GET /api/recovery/most-recovered endpoint
   - Auto-tracking on workout log completion

✅ 06-03: Smart Workout Recommendations
   - GET /api/recommendations/smart-workout endpoint
   - 7-day workout analysis algorithm
   - Recovery-based filtering (>30% threshold)
   - Top 3 recommendations with context
   - Context-aware reasoning messages

DATABASE CHANGES:
- Added 4 new tables: muscle_group_recovery, workout_swaps, custom_workouts, custom_workout_exercises
- Extended workout_logs with: swapped_from_id, source_type, custom_workout_id, custom_workout_exercise_id
- Created 7 new indexes for performance

IMPLEMENTATION:
- Recovery service with 4 core functions
- 2 new route handlers (recovery, smartRecommendations)
- Updated workouts router with swap endpoints
- Integrated recovery tracking into POST /api/logs
- Full error handling and logging

TESTING:
- Test file created: /backend/test/phase-06-tests.js
- Ready for E2E and staging validation

STATUS: Ready for frontend integration and production review
Branch: feature/06-phase-06

.claude/helpers/github-setup.sh

@@ -0,0 +1,28 @@
+#!/bin/bash
+# Setup GitHub integration for Claude Flow
+
+echo "🔗 Setting up GitHub integration..."
+
+# Check for gh CLI
+if ! command -v gh &> /dev/null; then
+    echo "⚠️  GitHub CLI (gh) not found"
+    echo "Install from: https://cli.github.com/"
+    echo "Continuing without GitHub features..."
+else
+    echo "✅ GitHub CLI found"
+    
+    # Check auth status
+    if gh auth status &> /dev/null; then
+        echo "✅ GitHub authentication active"
+    else
+        echo "⚠️  Not authenticated with GitHub"
+        echo "Run: gh auth login"
+    fi
+fi
+
+echo ""
+echo "📦 GitHub swarm commands available:"
+echo "  - npx claude-flow github swarm"
+echo "  - npx claude-flow repo analyze"
+echo "  - npx claude-flow pr enhance"
+echo "  - npx claude-flow issue triage"